5 ways Deep Apple’s approach is different

According to a recent study, a mere 1% of recent clinical candidates were delivered via virtual screen. 1

Virtual screening represents a huge opportunity because it offers major levers for acceleration, quality, and efficiency.

  1. An Analysis of Successful Hit-to-Clinical Candidate Pairs | Journal of Medicinal Chemistry (acs.org)
    https://pubs.acs.org/doi/10.1021/acs.jmedchem.3c00521

Deep Apple generates project-specific proprietary chemical libraries using our Orchard.ai™ virtual library expansion tool for machine learning-enabled acceleration of hit discovery.

These proprietary libraries are exceeding the diversity of currently available virtual chemical space, enabling better docking against targets of interest, and improving drug-like properties.

This proprietary scoring tool leverages the attributes of large-scale docking and physics-based methods.

Our ensemble cryo-EM technology captures dynamics and motion from intermediate structural states. These conformations can represent low population states that may be missed in empirical high-throughput screening, even though these conformations may be the most relevant to biological function.

This approach is designed to uncover new chemotypes, and to do so faster than other approaches.

Founder expertise in deep learning and neural networks lends Deep Apple unique competitive advantages in the growing field of AI drug discovery.

An integrated, in silico approach for rapid hit discovery

Orchard.ai™

Orchard.ai™ is Deep Apple’s virtual library expansion tool for machine learning enabled acceleration of hit discovery. Orchard.ai generates project specific proprietary chemical libraries that are > 95% novel against Zinc22, significantly increases dock scoring against the target of interest, and increases druglikeness for hits with high synthetic tractability.

With its proprietary advanced capabilities in structure-based, machine-learning driven drug design, Orchard.ai™ by Deep Apple can rapidly accelerate from target ID to lead optimization in 12 months or less.

  • Accelerated discoveryTraditional drug discovery is slow and expensive (2.5+ years from target to lead) 2 with many limitations.
  • Unlimited diversityMost clinical candidates come from known compounds with limited chemical diversity. Consequently, historical internal HTS screening decks are not suitable for many target classes.
  • Novel leadsThe Deep Apple discovery engine enables multiple potent, novel, diverse leads for each target.
  • Deep learningNovel structures and deep learning reveal transient pockets and biologically relevant conformations.
  • Faster hitsImplementation of of large-scale docking, machine learning and generative AI leads to dramatic improvements in speed and in potency of hits.